Top cofit genes for PP_2088 from Pseudomonas putida KT2440

RNA polymerase sigma factor SigX
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_5047		two-component system sensory histidine kinase/phosphatase GlnL/GlnG	0.53	0.54
2	PP_5048		two-component system DNA-binding transcriptional dual regulator GlnL/GlnG	no	0.51
3	PP_1589		uridylyltransferase	no	0.45
4	PP_5233		ammonium transporter AmtB	no	0.39
5	PP_5076		L-glutamate synthase(NADPH) alpha subunit	0.41	0.39
6	PP_5075		glutamate synthase (NADPH) beta subunit	no	0.38
7	PP_1703		assimilatory nitrate reductase/sulfite reductase	no	0.31
8	PP_1705		nitrite reductase [NAD(P)H] large subunit	no	0.30
9	PP_2093		NasT	no	0.29
10	PP_2094		putative Nitrate-binding protein NasS	no	0.26
11	PP_1706		Nitrite reductase	no	0.25
12	PP_0420		aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex	no	0.25
13	PP_2092		Nitrate transporter	no	0.25
14	PP_4985		16S rRNA m3U1498 methyltransferase	no	0.24
15	PP_0184		Argininosuccinate lyase	no	0.24
16	PP_4060		Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase	no	0.24
17	PP_1224		periplasmic subunit of the TolQRA transport system	no	0.23
18	PP_0082		tryptophan synthase alpha chain	no	0.23
19	PP_1320		stringent starvation protein A	0.29	0.23
20	PP_5179		spermidine/putrescine ABC transporter - ATP binding subunit	no	0.23

Or look for negative cofitness