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  • Top cofit genes for PP_2077 from Pseudomonas putida KT2440

    diaminopimelate decarboxylase
    SEED: Diaminopimelate decarboxylase (EC 4.1.1.20)
    KEGG: diaminopimelate decarboxylase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3073 3-hydroxybutyrate dehydrogenase no 0.47
    2 PP_1319 Ubiquinol--cytochrome c reductase, cytochrome c1 no 0.35
    3 PP_0397 protein kinase no 0.35
    4 PP_0395 putative type IV piliation protein no 0.35
    5 PP_0396 conserved protein of unknown function 0.81 0.35
    6 PP_1126 putative Hydrolase no 0.34
    7 PP_1623 RNA polymerase, sigma S (sigma 38) factor no 0.34
    8 PP_3128 putative Exopolysaccharide biosynthesis/transport protein no 0.34
    9 PP_4342 flagellar synthesis regulator, putative ATPase no 0.34
    10 PP_5502 ribosome modulation factor no 0.33
    11 PP_4375 flagellar chaperone, inhibits premature FliC assembly no 0.32
    12 PP_4008 ATP-dependent serine protease 0.52 0.31
    13 PP_1317 Ubiquinol-cytochrome c reductase iron-sulfur subunit no 0.31
    14 PP_0951 Ribosome hibernation promoting factor no 0.31
    15 PP_1318 Cytochrome b no 0.31
    16 PP_4250 cytochrome c oxidase subunit I, cbb3-type no 0.30
    17 PP_4343 Flagellar biosynthesis protein FlhF no 0.30
    18 PP_3209 Isoxanthopterin deaminase no 0.29
    19 PP_5107 Monofunctional biosynthetic peptidoglycan transglycosylase 0.38 0.29
    20 PP_4261 cation-transporting P-type ATPase no 0.29

    Or look for negative cofitness