Top cofit genes for PP_2054 from Pseudomonas putida KT2440

putative DNA-binding transcriptional regulator
SEED: LysR family transcriptional regulator clustered with dicarboxylate transport

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_0328		formaldehyde dehydrogenase	0.35	0.18
2	PP_2714		Sensor histidine kinase	0.36	0.18
3	PP_4742		Type I restriction-modification system, S subunit	no	0.17
4	PP_3919		conserved protein of unknown function	no	0.17
5	PP_4307		putative permease of the drug/metabolite transporter (DMT) superfamily	no	0.17
6	PP_4845		putative Urea ABC transporter, ATP-binding protein	0.35	0.17
7	PP_0506		putative ABC efflux transporter, permease protein	0.28	0.16
8	PP_3244		Magnesium transporter, MgtC family	no	0.16
9	PP_4658		putative methyl-accepting chemotaxis protein	no	0.16
10	PP_4246		Periplasmic binding protein	0.37	0.16
11	PP_3962		conserved protein of unknown function	no	0.16
12	PP_3585		multidrug efflux transport system - putative membrane fusion protein	0.42	0.15
13	PP_2693		putative Dipeptidase	no	0.15
14	PP_5605		conserved exported protein of unknown function	no	0.15
15	PP_1130		conserved protein of unknown function	no	0.15
16	PP_0636		Cold shock DNA-binding domain protein	no	0.15
17	PP_4300		putative hydroxypyruvate reductase	0.18	0.15
18	PP_4607		putative Transmembrane sensor	no	0.14
19	PP_2723		Uncharacterized oxidoreductase YhdF	no	0.14
20	PP_2491		ThiJ/PfpI family protein	no	0.14

Or look for negative cofitness