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  • Top cofit genes for PP_2028 from Pseudomonas putida KT2440

    conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat
    SEED: TPR domain protein in aerotolerance operon
    KEGG: uncharacterized protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1036 membrane-bound lytic murein transglycosylase F 0.95 0.73
    2 PP_2027 conserved exported protein of unknown function 0.99 0.71
    3 PP_2030 conserved protein of unknown function 0.92 0.63
    4 PP_2148 transcription-repair coupling factor 0.63 0.54
    5 PP_2032 putative ATPase 0.99 0.54
    6 PP_1627 conserved protein of unknown function no 0.54
    7 PP_2029 von Willebrand factor type A domain protein 0.99 0.52
    8 PP_1798 Outer membrane efflux protein no 0.51
    9 PP_1871 Protease HtpX no 0.51
    10 PP_5279 conserved protein of unknown function no 0.51
    11 PP_1355 Muropeptide permease AmpG 0.34 0.50
    12 PP_1204 putative Lipoprotein 0.27 0.50
    13 PP_5101 coproporphyrinogen/heterocyclic compound oxidase (aerobic) 0.21 0.49
    14 PP_0789 N-acetyl-anhydromuramyl-L-alanine-amidase no 0.49
    15 PP_1797 HlyD family secretion protein no 0.48
    16 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.29 0.48
    17 PP_3627 conserved protein of unknown function no 0.47
    18 PP_1807 2-dehydro-3-deoxyphosphooctonate aldolase no 0.47
    19 PP_0405 conserved protein of unknown function 0.36 0.47
    20 PP_1777 phosphomannomutase no 0.47

    Or look for negative cofitness