Top cofit genes for PP_1983 from Pseudomonas putida KT2440

PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
SEED: Sensory box/GGDEF family protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4358		flagellar synthesis, switching and energizing component	no	0.29
2	PP_0914		GGDEF domain protein	0.52	0.28
3	PP_4368		flagellar motor switch protein	no	0.26
4	PP_4369		Flagellar M-ring protein	no	0.26
5	PP_4359		Flagellar protein FliL	no	0.25
6	PP_4589		D-isomer specific 2-hydroxyacid dehydrogenase family protein	no	0.24
7	PP_0163		putative transcriptional regulator	no	0.23
8	PP_0164		conserved protein of unknown function	no	0.23
9	PP_1493		chemotaxis response regulator protein-glutamate methylesterase of group 3 operon	0.52	0.23
10	PP_2596		putative ABC transporter, permease/ATP-binding protein	no	0.22
11	PP_4370		Flagellar hook-basal body complex protein FliE	no	0.22
12	PP_4334		ParA family protein	no	0.22
13	PP_4381		Flagellar hook-associated protein FlgK	no	0.22
14	PP_4337		chemotaxis response regulator protein-glutamate methylesterase of group 1 operon	no	0.22
15	PP_4344		flagellar export pore protein	no	0.21
16	PP_4396		conserved protein of unknown function	no	0.21
17	PP_4378		flagellin, filament structural protein	no	0.21
18	PP_0704		RNA polymerase sigma-70 factor, ECF subfamily	no	0.21
19	PP_4382		Peptidoglycan hydrolase FlgJ	0.29	0.20
20	PP_3359		putative Hydroxycinnamic acid degradation regulator	no	0.20

Or look for negative cofitness