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  • Top cofit genes for PP_1967 from Pseudomonas putida KT2440

    tRNA D-aminoacylase
    SEED: Putative deoxyribonuclease YcfH
    KEGG: TatD DNase family protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4723 Carbamoyl-phosphate synthase large chain no 0.22
    2 PP_4724 Carbamoyl-phosphate synthase small chain no 0.19
    3 PP_4999 dihydroorotase-like protein no 0.18
    4 PP_2851 conserved protein of unknown function no 0.18
    5 PP_3398 putative Curli fiber surface-exposed nucleator CsgB no 0.18
    6 PP_0672 Sensory box protein no 0.17
    7 PP_5719 choline-responsive transcriptional repressor BetI 0.76 0.17
    8 PP_5262 Probable multidrug resistance protein NorM 0.30 0.17
    9 PP_1301 quality control serine endoprotease DegS 0.42 0.16
    10 PP_0691 Glutamate 5-kinase 0.48 0.16
    11 PP_5261 Transcriptional regulator, LysR family 0.30 0.16
    12 PP_1880 Outer membrane autotransporter no 0.16
    13 PP_3761 Sensor histidine kinase/response regulator 0.41 0.16
    14 PP_1276 conserved protein of unknown function no 0.15
    15 PP_2978 conserved protein of unknown function no 0.15
    16 PP_0669 Outer membrane ferric siderophore receptor no 0.15
    17 PP_1562 putative Phage terminase, small subunit no 0.15
    18 PP_3990 substrate or modulator of FtsH-mediated proteolysis 0.47 0.15
    19 PP_0889 conserved exported protein of unknown function 0.43 0.15
    20 PP_4685 conserved protein of unknown function no 0.15

    Or look for negative cofitness