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  • Top cofit genes for PP_1893 from Pseudomonas putida KT2440

    medium-long chain acyl-CoA dehydrogenase
    SEED: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
    KEGG: acyl-CoA dehydrogenase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3733 putative ABC transporter lipoprotein no 0.20
    2 PP_5276 Phospholipase D family protein 0.47 0.18
    3 PP_4221 non-ribosomal peptide synthetase (subunit of ferribactin synthase) no 0.18
    4 PP_2751 conserved exported protein of unknown function no 0.18
    5 PP_3239 putative cointegrate resolution protein T Tn4652 no 0.18
    6 PP_1880 Outer membrane autotransporter 0.23 0.17
    7 PP_3613 L-sorbosone dehydrogenase no 0.17
    8 PP_1708 Oxidoreductase, short chain dehydrogenase/reductase family no 0.17
    9 PP_5558 putative transcriptional xre family of phage origin no 0.16
    10 PP_3732 Enoyl-CoA hydratase/isomerase family protein no 0.16
    11 PP_3375 endonuclease I no 0.16
    12 PP_0225 sulfur compound ABC transporter - ATP-binding subunit no 0.16
    13 PP_3751 putative Cyanate transporter no 0.16
    14 PP_3171 conserved protein of unknown function no 0.16
    15 PP_3762 Response regulator no 0.15
    16 PP_2527 conserved membrane protein of unknown function no 0.15
    17 PP_3467 Sigma-54 dependent transcriptional regulator 0.43 0.15
    18 PP_3177 conserved protein of unknown function 0.31 0.15
    19 PP_4243 non-ribosomal peptide synthase (subunit of ferribactin synthase) no 0.15
    20 PP_4011 isocitrate dehydrogenase, NADP(+)-specific no 0.15

    Or look for negative cofitness