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    • Top cofit genes for PP_1889 from Pseudomonas putida KT2440

    Type 1 pili subunit FimD
    SEED: Outer membrane usher protein FIMD
    KEGG: outer membrane usher protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0906 putative Multidrug efflux RND transporter 0.17 0.19
    2 PP_0508 conserved exported protein of unknown function no 0.16
    3 PP_5009 conserved protein of unknown function no 0.14
    4 PP_3913 protein of unknown function no 0.14
    5 PP_2246 catabolic D-arginine dehydrogenase, FAD-dependent no 0.14
    6 PP_3625 Transporter, LysE family no 0.14
    7 PP_2023 Glutathione S-transferase family protein no 0.14
    8 PP_0582 Thiolase family protein no 0.13
    9 PP_3482 conserved protein of unknown function no 0.13
    10 PP_4308 Transcriptional regulator, AsnC family no 0.13
    11 PP_3080 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase no 0.13
    12 PP_5542 protein of unknown function no 0.13
    13 PP_3071 acetoacetyl-coenzyme A synthetase no 0.13
    14 PP_4653 adenine:H+ symporter no 0.13
    15 PP_4978 conserved protein of unknown function no 0.13
    16 PP_4924 Serine protease, subtilase family no 0.13
    17 PP_1887 conserved protein of unknown function no 0.13
    18 PP_4459 transposase no 0.12
    19 PP_4421 putative aminotransferase no 0.12
    20 PP_1794 conserved hypothetical protein no 0.12

    Or look for negative cofitness