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  • Top cofit genes for PP_1779 from Pseudomonas putida KT2440

    Lipopolysaccharide ABC export system, ATP-binding protein
    SEED: ATP binding component of ABC-transporter
    KEGG: lipopolysaccharide transport system ATP-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1778 Lipopolysaccharide ABC export system, permease protein 0.99 0.95
    2 PP_1777 phosphomannomutase 0.94 0.72
    3 PP_4936 O-antigen polymerase 0.68 0.71
    4 PP_1780 putative mannosyltransferase no 0.70
    5 PP_1804 Glycosyl transferase WbpL 0.70 0.69
    6 PP_4938 putative Glycosyl transferase 0.49 0.69
    7 PP_1802 glycosyl transferase 0.77 0.68
    8 PP_1799 GDP-mannose 4,6-dehydratase 0.91 0.67
    9 PP_1801 Glycosyl transferase WbpY 0.99 0.67
    10 PP_1805 Polysaccharide biosynthesis protein 0.81 0.66
    11 PP_1776 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase 0.85 0.66
    12 PP_1800 Oxidoreductase Rmd 0.43 0.64
    13 PP_1803 UDP-sugar epimerase 0.99 0.59
    14 PP_4726 Chaperone protein DnaJ 0.93 0.54
    15 PP_0397 protein kinase no 0.51
    16 PP_0396 conserved protein of unknown function 0.30 0.50
    17 PP_0395 putative type IV piliation protein 0.34 0.50
    18 PP_1355 Muropeptide permease AmpG 0.79 0.50
    19 PP_0789 N-acetyl-anhydromuramyl-L-alanine-amidase 0.87 0.50
    20 PP_0435 Peptidase, M23/M37 family 0.73 0.48

    Or look for negative cofitness