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  • Top cofit genes for PP_1761 from Pseudomonas putida KT2440

    diguanylate cyclase with phosphodiesterase domain
    SEED: Sensory box/GGDEF family protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4171 conserved exported protein of unknown function no 0.51
    2 PP_1113 Pyridoxal-phosphate dependent enzyme family protein no 0.45
    3 PP_0574 DNA-binding response regulator, LuxR family 0.48 0.42
    4 PP_1650 Sensor protein GacS 0.61 0.40
    5 PP_5003 poly(3-hydroxyalkanoate) polymerase 1 no 0.40
    6 PP_4099 two-componenent system BarA/UvrY - regulatory subunit 0.60 0.40
    7 PP_5053 Protein-export protein SecB no 0.39
    8 PP_2389 conserved protein of unknown function no 0.39
    9 PP_4173 Sensor histidine kinase/response regulator no 0.39
    10 PP_4100 Transcriptional regulator, Cro/CI family 0.20 0.38
    11 PP_5005 Poly(3-hydroxyalkanoate) polymerase 2 0.33 0.37
    12 PP_0806 putative Surface adhesion protein no 0.35
    13 PP_0805 Outer membrane efflux protein no 0.34
    14 PP_0803 Protein secretion ABC efflux system, membrane fusion protein no 0.34
    15 PP_2387 conserved protein of unknown function no 0.33
    16 PP_0804 Protein secretion ABC efflux system, permease and ATP-binding protein no 0.32
    17 PP_0809 disulfide bond formation protein B 0.23 0.32
    18 PP_1112 conserved membrane protein of unknown function 0.56 0.31
    19 PP_5006 Transcriptional regulator, TetR family no 0.30
    20 PP_1236 putative Glycine cleavage system transcriptional repressor 0.27 0.30

    Or look for negative cofitness