Top cofit genes for PP_1655 from Pseudomonas putida KT2440

23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KEGG: RNA methyltransferase, TrmA family

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_1656		ATP:GTP 3'-pyrophosphotransferase	0.68	0.84
2	PP_1650		Sensor protein GacS	0.51	0.61
3	PP_4099		two-componenent system BarA/UvrY - regulatory subunit	0.52	0.60
4	PP_t49		tRNA-Met	no	0.58
5	PP_1626		DNA mismatch repair protein MutS	0.58	0.53
6	PP_2231		putative permease of the drug/metabolite transporter (DMT) superfamily	no	0.52
7	PP_4171		conserved exported protein of unknown function	no	0.51
8	PP_4694		Glutamyl-Q tRNA(Asp) synthetase	0.69	0.50
9	PP_1654		cysteine synthase B	0.59	0.49
10	PP_1798		Outer membrane efflux protein	no	0.49
11	PP_5217		Polyphosphate kinase	0.49	0.48
12	PP_1627		conserved protein of unknown function	no	0.47
13	PP_1770		3-phosphoshikimate 1-carboxyvinyltransferase	0.71	0.46
14	PP_0680		ATP-dependent protease-like protein	0.41	0.45
15	PP_0066		Ribosomal RNA small subunit methyltransferase B	0.74	0.45
16	PP_1774		conserved exported protein of unknown function	no	0.44
17	PP_0794		1-phosphofructokinase monomer	0.58	0.44
18	PP_0725		conserved hypothetical TPR repeat protein	0.41	0.44
19	PP_1803		UDP-sugar epimerase	no	0.43
20	PP_2032		putative ATPase	0.75	0.43

Or look for negative cofitness