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  • Top cofit genes for PP_1650 from Pseudomonas putida KT2440

    Sensor protein GacS
    SEED: BarA sensory histidine kinase (= VarS = GacS)
    KEGG: two-component system, NarL family, sensor histidine kinase BarA

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4099 two-componenent system BarA/UvrY - regulatory subunit 1.00 1.00
    2 PP_4171 conserved exported protein of unknown function 0.91 0.78
    3 PP_2231 putative permease of the drug/metabolite transporter (DMT) superfamily 0.41 0.75
    4 PP_1626 DNA mismatch repair protein MutS 0.77 0.63
    5 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD no 0.59
    6 PP_1656 ATP:GTP 3'-pyrophosphotransferase 0.82 0.51
    7 PP_0540 conserved inner membrane protein 0.81 0.50
    8 PP_0725 conserved hypothetical TPR repeat protein 0.71 0.50
    9 PP_4173 Sensor histidine kinase/response regulator 0.92 0.49
    10 PP_1663 conserved exported protein of unknown function no 0.47
    11 PP_4874 50S ribosomal protein L9 0.30 0.46
    12 PP_1113 Pyridoxal-phosphate dependent enzyme family protein no 0.46
    13 PP_5058 Carboxy-terminal-processing protease 0.73 0.46
    14 PP_1803 UDP-sugar epimerase no 0.46
    15 PP_2889 putative Transmembrane regulator PrtR 0.87 0.46
    16 PP_1798 Outer membrane efflux protein no 0.46
    17 PP_5114 putative adenine methyltransferase 0.72 0.46
    18 PP_1627 conserved protein of unknown function no 0.46
    19 PP_4100 Transcriptional regulator, Cro/CI family no 0.46
    20 PP_2148 transcription-repair coupling factor 0.94 0.44

    Or look for negative cofitness