Top cofit genes for PP_1644 from Pseudomonas putida KT2440

NAD(P)H dehydrogenase (quinone)
SEED: Flavoprotein WrbA
KEGG: Trp repressor binding protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_1063		DNA-binding transcriptional regulator, homocysteine-binding	no	0.31
2	PP_3786		aminotransferase	no	0.26
3	PP_4684		conserved protein of unknown function with kinase-like domain	0.31	0.25
4	PP_3788		putative Non-ribosomal peptide synthetase	no	0.24
5	PP_3790		diaminopimelate epimerase	no	0.24
6	PP_3244		Magnesium transporter, MgtC family	0.33	0.23
7	PP_0892		Phospholipase family protein	0.24	0.22
8	PP_2714		Sensor histidine kinase	no	0.22
9	PP_5348		Transcriptional regulator, LysR family	0.53	0.21
10	PP_3325		putative Outer membrane ferric siderophore receptor	0.47	0.21
11	PP_4078		conserved protein of unknown function	no	0.21
12	PP_2256		Transcriptional regulator, Cro/CI family	no	0.20
13	PP_3452		GGDEF domain protein	no	0.20
14	PP_2817		Multidrug efflux RND membrane fusion protein MexC	no	0.20
15	PP_0293		Imidazole glycerol phosphate synthase subunit HisF	0.75	0.20
16	PP_5098		methionine biosynthesis protein MetW	no	0.19
17	PP_2558		putative Outer membrane efflux protein	no	0.19
18	PP_0506		putative ABC efflux transporter, permease protein	no	0.19
19	PP_0420		aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex	0.15	0.19
20	PP_1709		Fumarylacetoacetate hydrolase family protein	0.29	0.19

Or look for negative cofitness