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Cofit
Protein
Homologs
Top cofit genes for PP_1555 from
Pseudomonas putida KT2440
putative Phage integrase
SEED: phage integrase, putative
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PP
_1145
RNA polymerase-associated protein RapA
no
0.20
2
PP
_5250
proline-specific outer membrane porin D
no
0.20
3
PP
_0162
RNA polymerase sigma-70 factor, ECF subfamily
no
0.18
4
PP
_3104
conserved protein of unknown function
no
0.18
5
PP
_4964
D-erythrose 4-phosphate dehydrogenase
no
0.16
6
PP
_1353
conserved membrane protein of unknown function
no
0.16
7
PP
_5309
oxidative and nitrosative stress transcriptional dual regulator
no
0.16
8
PP
_1128
OmpA family protein
no
0.16
9
PP
_0393
putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
no
0.16
10
PP
_0830
Acetyltransferase, GNAT family
no
0.16
11
PP
_5310
junction-specific ATP-dependent DNA helicase
no
0.16
12
PP
_2607
conserved exported protein of unknown function
no
0.15
13
PP
_1931
conserved protein of unknown function
no
0.15
14
PP
_2336
aconitate hydratase 1
no
0.15
15
PP
_5738
conserved protein of unknown function
no
0.15
16
PP
_4693
RNA polymerase-binding transcription factor DksA
no
0.15
17
PP
_3440
conserved protein of unknown function
no
0.15
18
PP
_1629
Protein RecA
no
0.15
19
PP
_2337
aconitate isomerase
no
0.15
20
PP
_2083
putative Lipase
no
0.14
Or look for
negative cofitness