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  • Top cofit genes for PP_1522 from Pseudomonas putida KT2440

    major cold shock protein
    SEED: Cold shock protein CspA
    KEGG: cold shock protein (beta-ribbon, CspA family)

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0984 conserved membrane protein of unknown function no 0.25
    2 PP_2319 conserved protein of unknown function 0.27 0.22
    3 PP_1225 7-carboxy-7-deazaguanine synthase 0.20 0.21
    4 PP_4946 sodium/L-proline transporter no 0.21
    5 PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase 0.69 0.20
    6 PP_1226 pre-queuosine 0 synthase no 0.20
    7 PP_0496 Sodium/alanine symporter 0.23 0.19
    8 PP_4590 conserved protein of unknown function 0.45 0.19
    9 PP_1867 conserved protein of unknown function no 0.19
    10 PP_5337 LysR family transcriptional regulator no 0.18
    11 PP_1099 Cold shock protein CapB no 0.18
    12 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase no 0.18
    13 PP_2379 putative cytochrome oxidase biogenesis protein no 0.18
    14 PP_2614 type 6 secretion system protein no 0.18
    15 PP_4337 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon 0.38 0.18
    16 PP_4343 Flagellar biosynthesis protein FlhF no 0.18
    17 PP_0123 DNA polymerase I, 5 no 0.18
    18 PP_2144 Transcriptional regulator, TetR family 0.76 0.18
    19 PP_0498 conserved protein of unknown function no 0.18
    20 PP_4589 D-isomer specific 2-hydroxyacid dehydrogenase family protein no 0.18

    Or look for negative cofitness