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  • Top cofit genes for PP_1490 from Pseudomonas putida KT2440

    Probable biofilm formation methyltransferase WspC
    SEED: Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)
    KEGG: chemotaxis protein methyltransferase WspC

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1488 Methyl-accepting chemotaxis transducer 0.84 0.63
    2 PP_1492 Sensor histidine kinase/response regulator 0.62 0.56
    3 PP_1494 Response regulator/GGDEF domain protein 0.81 0.56
    4 PP_2413 GGDEF family protein no 0.45
    5 PP_0174 conserved protein of unknown function 0.62 0.40
    6 PP_0173 putative transcriptional factor-related protein no 0.36
    7 PP_4250 cytochrome c oxidase subunit I, cbb3-type 0.32 0.35
    8 PP_1489 CheW domain protein 0.59 0.34
    9 PP_4722 Transcription elongation factor GreA 0.44 0.33
    10 PP_2372 putative Periplasmic sugar-binding protein 0.49 0.32
    11 PP_0563 Response regulator 0.58 0.32
    12 PP_4261 cation-transporting P-type ATPase 0.40 0.32
    13 PP_1319 Ubiquinol--cytochrome c reductase, cytochrome c1 0.80 0.32
    14 PP_0672 Sensory box protein 0.11 0.29
    15 PP_1317 Ubiquinol-cytochrome c reductase iron-sulfur subunit no 0.28
    16 PP_3761 Sensor histidine kinase/response regulator 0.11 0.28
    17 PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase 0.55 0.28
    18 PP_4900 epoxyqueuosine reductase no 0.28
    19 PP_4620 Fumarylacetoacetase no 0.28
    20 PP_4519 Agglutination protein 0.65 0.28

    Or look for negative cofitness