Top cofit genes for PP_1429 from Pseudomonas putida KT2440

Sigma factor AlgU regulatory protein MucB
SEED: Sigma factor RpoE negative regulatory protein RseB precursor
KEGG: sigma-E factor negative regulatory protein RseB

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4373		Transcriptional regulator FleQ	0.63	0.41
2	PP_1428		Sigma factor AlgU negative regulatory protein	0.68	0.32
3	PP_0355		Response regulator	no	0.31
4	PP_0166		HlyD family secretion protein	0.40	0.30
5	PP_4386		flagellar basal-body rod protein FlgF	0.65	0.28
6	PP_4391		flagellar basal-body rod protein FlgB	0.64	0.28
7	PP_0168		putative surface adhesion protein	no	0.28
8	PP_0167		Toxin secretion ATP-binding protein	0.44	0.27
9	PP_4390		flagellar basal-body rod protein FlgC	0.69	0.27
10	PP_4384		Flagellar L-ring protein	0.65	0.26
11	PP_4519		Agglutination protein	0.52	0.26
12	PP_4352		flagellin export apparatus, substrate specificity protein	0.64	0.26
13	PP_4353		Flagellar biosynthetic protein fliR	0.66	0.26
14	PP_4382		Peptidoglycan hydrolase FlgJ	0.67	0.25
15	PP_4344		flagellar export pore protein	0.65	0.25
16	PP_4904		Flagellar motor rotation protein	0.61	0.25
17	PP_0165		GGDEF domain protein	0.39	0.25
18	PP_4385		flagellar basal-body rod protein FlgG	0.69	0.25
19	PP_4592		putative metal dependent hydrolase	no	0.24
20	PP_4366		flagellum-specific ATP synthase	0.65	0.24

Or look for negative cofitness