Top cofit genes for PP_1428 from Pseudomonas putida KT2440

Sigma factor AlgU negative regulatory protein
SEED: Sigma factor RpoE negative regulatory protein RseA
KEGG: sigma-E factor negative regulatory protein RseA

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4342		flagellar synthesis regulator, putative ATPase	0.38	0.44
2	PP_4373		Transcriptional regulator FleQ	0.65	0.44
3	PP_5084		penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase	0.61	0.40
4	PP_4343		Flagellar biosynthesis protein FlhF	0.71	0.40
5	PP_4880		exoribonuclease R	no	0.36
6	PP_4875		conserved membrane protein of unknown function	no	0.35
7	PP_0166		HlyD family secretion protein	0.36	0.35
8	PP_5310		junction-specific ATP-dependent DNA helicase	no	0.34
9	PP_2889		putative Transmembrane regulator PrtR	0.69	0.34
10	PP_0167		Toxin secretion ATP-binding protein	0.74	0.34
11	PP_0168		putative surface adhesion protein	no	0.33
12	PP_4131		NADH-quinone oxidoreductase subunit N	no	0.33
13	PP_4121		NADH-quinone oxidoreductase subunit C/D	no	0.33
14	PP_4519		Agglutination protein	0.71	0.33
15	PP_1629		Protein RecA	no	0.33
16	PP_5045		tRNA sulfurtransferase	no	0.33
17	PP_2331		conserved membrane protein of unknown function	0.44	0.33
18	PP_4124		NADH-quinone oxidoreductase subunit G	no	0.33
19	PP_2332		conserved exported protein of unknown function	0.34	0.32
20	PP_4120		NADH-quinone oxidoreductase subunit B	no	0.32

Or look for negative cofitness