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  • Top cofit genes for PP_1409 from Pseudomonas putida KT2440

    ribosomal small subunit pseudouridine synthase A
    SEED: Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)
    KEGG: ribosomal small subunit pseudouridine synthase A

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.48 0.21
    2 PP_1309 conserved exported protein of unknown function no 0.20
    3 PP_5055 Sulfurtransferase no 0.20
    4 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA 0.48 0.19
    5 PP_5283 periplasmic dipeptide transport protein no 0.19
    6 PP_1310 conserved hypothetical protein no 0.19
    7 PP_4515 Transcriptional regulator, MarR family no 0.19
    8 PP_1301 quality control serine endoprotease DegS 0.17 0.19
    9 PP_0564 conserved protein of unknown function no 0.19
    10 PP_1798 Outer membrane efflux protein 0.28 0.18
    11 PP_1627 conserved protein of unknown function no 0.18
    12 PP_4217 outer membrane ferripyoverdine receptor FpvA, TonB-dependent no 0.17
    13 PP_2723 Uncharacterized oxidoreductase YhdF no 0.17
    14 PP_0113 methionine ABC transporter, permease protein 0.37 0.17
    15 PP_1302 putative metal-binding hydrolase-oxidase enzyme 0.64 0.17
    16 PP_1075 glycerol kinase 0.53 0.17
    17 PP_0770 PemI-like protein no 0.17
    18 PP_4497 conserved protein of unknown function no 0.17
    19 PP_0540 conserved inner membrane protein 0.61 0.16
    20 PP_4911 conserved protein of unknown function no 0.16

    Or look for negative cofitness