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  • Top cofit genes for PP_1385 from Pseudomonas putida KT2440

    Probable efflux pump membrane transporter TtgB
    SEED: RND efflux system, inner membrane transporter CmeB
    KEGG: hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1386 Probable efflux pump periplasmic linker TtgA 0.99 0.98
    2 PP_1384 Probable efflux pump outer membrane protein TtgC 0.98 0.95
    3 PP_3474 putative Curli fiber protein CsgE no 0.67
    4 PP_0961 toluene tolerance protein 0.58 0.57
    5 PP_2163 VacJ lipoprotein 0.49 0.54
    6 PP_0960 phospholipid ABC transporter binding protein 0.55 0.47
    7 PP_0958 phospholipid ABC transporter ATP-binding subunit 0.48 0.45
    8 PP_0346 putative Heptose kinase WapQ 0.87 0.45
    9 PP_0962 toluene-tolerance protein 0.40 0.43
    10 PP_1232 conserved exported protein of unknown function 0.61 0.42
    11 PP_1941 conserved protein of unknown function no 0.41
    12 PP_4937 toluene tolerance protein 0.68 0.40
    13 PP_2436 Transcriptional regulator, LysR family 0.34 0.39
    14 PP_0959 phospholipid ABC transporter 0.45 0.39
    15 PP_3154 lipid A 3-O-deacylase no 0.36
    16 PP_3925 conserved protein of unknown function 0.57 0.36
    17 PP_0345 putative Heptose kinase WapP 0.63 0.35
    18 PP_3454 putative transcriptional regulatory protein 0.61 0.35
    19 PP_3300 Transcriptional regulator, tetR family 0.65 0.32
    20 PP_2130 putative Soluble lytic transglycosylase 0.33 0.31

    Or look for negative cofitness