Top cofit genes for PP_1313 from Pseudomonas putida KT2440

Transcriptional regulator, AraC family
SEED: Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4693		RNA polymerase-binding transcription factor DksA	no	0.30
2	PP_3691		DNA helicase-related protein	no	0.26
3	PP_1656		ATP:GTP 3'-pyrophosphotransferase	0.34	0.25
4	PP_4947		proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase	no	0.24
5	PP_5639		conserved exported protein of unknown function	no	0.24
6	PP_4785		conserved exported protein of unknown function	no	0.24
7	PP_2082		phosphoenolpyruvate synthetase	no	0.24
8	PP_2662		conserved exported protein of unknown function	no	0.22
9	PP_2081		putative phosphoenolpyruvate synthase regulatory protein	no	0.21
10	PP_3417		D-gluconate transporter	no	0.21
11	PP_5035		Histidine utilization repressor	0.28	0.21
12	PP_4964		D-erythrose 4-phosphate dehydrogenase	0.78	0.21
13	PP_0674		ADP/ATP ratio sensor and inhibitor of translation	0.34	0.20
14	PP_4804		RlpA-like lipoprotein	no	0.20
15	PP_0570		lipoprotein of unknown function	no	0.20
16	PP_1826		Hydrolase, isochorismatase family	0.47	0.20
17	PP_5313		DNA-binding protein HU-alpha	no	0.20
18	PP_4902		Oligoribonuclease	no	0.20
19	PP_2666		conserved exported protein of unknown function	0.21	0.19
20	PP_2682		Fe-containing alcohol dehydrogenase	no	0.19

Or look for negative cofitness