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  • Top cofit genes for PP_1301 from Pseudomonas putida KT2440

    quality control serine endoprotease DegS
    SEED: Outer membrane stress sensor protease DegS
    KEGG: serine protease DegS

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1427 RNA polymerase sigma E factor 0.96 0.55
    2 PP_4911 conserved protein of unknown function 0.75 0.44
    3 PP_3790 diaminopimelate epimerase no 0.27
    4 PP_2714 Sensor histidine kinase no 0.27
    5 PP_1348 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase no 0.27
    6 PP_4922 Phosphomethylpyrimidine synthase 0.58 0.27
    7 PP_1063 DNA-binding transcriptional regulator, homocysteine-binding 0.55 0.26
    8 PP_1309 conserved exported protein of unknown function 0.52 0.26
    9 PP_1015 mannose/glucose ABC transporter, glucose-binding periplasmic protein no 0.25
    10 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.30 0.25
    11 PP_5104 thiazole synthase 0.43 0.25
    12 PP_2376 Esterified fatty acid cis/trans isomerase no 0.24
    13 PP_1016 mannose/glucose ABC transporter, permease protein 0.64 0.24
    14 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.29 0.24
    15 PP_5261 Transcriptional regulator, LysR family no 0.24
    16 PP_1020 putative glucose-6-phosphate 1-epimerase no 0.24
    17 PP_4497 conserved protein of unknown function no 0.24
    18 PP_2418 putative cobalamin ABC transporter, periplasmic no 0.24
    19 PP_1011 glucokinase 0.48 0.24
    20 PP_4246 Periplasmic binding protein 0.55 0.24

    Or look for negative cofitness