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  • Top cofit genes for PP_1281 from Pseudomonas putida KT2440

    Alginate lyase
    SEED: Alginate lyase precursor (EC 4.2.2.3)
    KEGG: poly(beta-D-mannuronate) lyase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1627 conserved protein of unknown function no 0.42
    2 PP_1798 Outer membrane efflux protein no 0.42
    3 PP_1777 phosphomannomutase no 0.39
    4 PP_0540 conserved inner membrane protein 0.40 0.39
    5 PP_0066 Ribosomal RNA small subunit methyltransferase B no 0.37
    6 PP_1774 conserved exported protein of unknown function no 0.37
    7 PP_2148 transcription-repair coupling factor 0.25 0.37
    8 PP_5283 periplasmic dipeptide transport protein 0.81 0.37
    9 PP_1803 UDP-sugar epimerase no 0.37
    10 PP_5279 conserved protein of unknown function no 0.37
    11 PP_5101 coproporphyrinogen/heterocyclic compound oxidase (aerobic) no 0.36
    12 PP_5113 predicted Zn-dependent peptidases 0.69 0.36
    13 PP_1871 Protease HtpX no 0.35
    14 PP_0789 N-acetyl-anhydromuramyl-L-alanine-amidase no 0.35
    15 PP_3627 conserved protein of unknown function no 0.35
    16 PP_1204 putative Lipoprotein 0.33 0.34
    17 PP_1801 Glycosyl transferase WbpY no 0.34
    18 PP_1776 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase no 0.34
    19 PP_1799 GDP-mannose 4,6-dehydratase no 0.33
    20 PP_1805 Polysaccharide biosynthesis protein 0.64 0.33

    Or look for negative cofitness