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  • Top cofit genes for PP_1236 from Pseudomonas putida KT2440

    putative Glycine cleavage system transcriptional repressor
    SEED: Glycine cleavage system transcriptional antiactivator GcvR
    KEGG: glycine cleavage system transcriptional repressor

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4171 conserved exported protein of unknown function no 0.30
    2 PP_1761 diguanylate cyclase with phosphodiesterase domain 0.29 0.29
    3 PP_1650 Sensor protein GacS 0.46 0.29
    4 PP_4099 two-componenent system BarA/UvrY - regulatory subunit 0.67 0.29
    5 PP_1626 DNA mismatch repair protein MutS 0.73 0.28
    6 PP_4964 D-erythrose 4-phosphate dehydrogenase no 0.27
    7 PP_0163 putative transcriptional regulator 0.44 0.26
    8 PP_4515 Transcriptional regulator, MarR family no 0.25
    9 PP_2387 conserved protein of unknown function no 0.25
    10 PP_1204 putative Lipoprotein no 0.25
    11 PP_2231 putative permease of the drug/metabolite transporter (DMT) superfamily no 0.24
    12 PP_4874 50S ribosomal protein L9 no 0.24
    13 PP_0574 DNA-binding response regulator, LuxR family 0.43 0.24
    14 PP_4372 Sensory box histidine kinase FleS 0.27 0.23
    15 PP_0789 N-acetyl-anhydromuramyl-L-alanine-amidase 0.75 0.23
    16 PP_1444 quinoprotein glucose dehydrogenase no 0.23
    17 PP_5279 conserved protein of unknown function 0.53 0.23
    18 PP_5146 RNA pyrophosphohydrolase 0.23 0.23
    19 PP_4358 flagellar synthesis, switching and energizing component 0.81 0.23
    20 PP_2148 transcription-repair coupling factor 0.33 0.22

    Or look for negative cofitness