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  • Top cofit genes for PP_1226 from Pseudomonas putida KT2440

    pre-queuosine 0 synthase
    SEED: Queuosine Biosynthesis QueC ATPase
    KEGG: queuosine biosynthesis protein QueC

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4722 Transcription elongation factor GreA 0.64 0.45
    2 PP_5350 Transcriptional regulator, RpiR family 0.62 0.38
    3 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.80 0.37
    4 PP_4546 ATP-dependent helicase HrpA 0.61 0.37
    5 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.94 0.35
    6 PP_5294 Ribonuclease PH 0.44 0.35
    7 PP_4710 tRNA pseudouridine 55 synthase 0.71 0.34
    8 PP_4939 conserved protein of unknown function 0.25 0.34
    9 PP_1367 formyltetrahydrofolate hydrolase no 0.34
    10 PP_2169 tRNA-dihydrouridine synthase A 0.30 0.34
    11 PP_1099 Cold shock protein CapB no 0.33
    12 PP_2929 Carboxynorspermidine/carboxyspermidine decarboxylase no 0.33
    13 PP_4475 succinylglutamate desuccinylase no 0.33
    14 PP_0963 putative BolA family protein 0.57 0.33
    15 PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase 0.76 0.33
    16 PP_1362 pyruvate kinase II 0.58 0.32
    17 PP_4787 putative protein with nucleoside triphosphate hydrolase domain 0.63 0.32
    18 PP_4532 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis 0.65 0.32
    19 PP_1225 7-carboxy-7-deazaguanine synthase 0.94 0.32
    20 PP_4900 epoxyqueuosine reductase 0.77 0.32

    Or look for negative cofitness