Top cofit genes for PP_1197 from Pseudomonas putida KT2440

ribosomal protein S12 methylthiotransferase
SEED: Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase
KEGG: ribosomal protein S12 methylthiotransferase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4710		tRNA pseudouridine 55 synthase	0.80	0.34
2	PP_0247		Osmolarity sensor protein EnvZ	0.80	0.28
3	PP_4787		putative protein with nucleoside triphosphate hydrolase domain	0.74	0.23
4	PP_1321		ClpXP protease specificity-enhancing factor	no	0.23
5	PP_2223		conserved protein of unknown function	no	0.23
6	PP_0697		ribosomal-protein-S18-alanine N-acetyltransferase	0.67	0.23
7	PP_1917		4-amino-4-deoxychorismate lyase	0.58	0.23
8	PP_4939		conserved protein of unknown function	no	0.22
9	PP_1908		putative Peptidase	0.43	0.21
10	PP_4654		tRNA/tmRNA (uracil-C(5))-methyltransferase	0.33	0.20
11	PP_0063		putative Lipid A biosynthesis lauroyl acyltransferase	no	0.19
12	PP_2929		Carboxynorspermidine/carboxyspermidine decarboxylase	0.77	0.19
13	PP_0266		Agmatine deiminase	0.30	0.19
14	PP_0963		putative BolA family protein	0.70	0.19
15	PP_4803		D-alanyl-D-alanine carboxypeptidase	0.34	0.18
16	PP_2169		tRNA-dihydrouridine synthase A	0.63	0.18
17	PP_2656		phosphate ABC transporter	0.43	0.18
18	PP_0340		Glutamate-ammonia-ligase adenylyltransferase	0.64	0.18
19	PP_0567		Biosynthetic arginine decarboxylase	0.34	0.18
20	PP_2977		Tn4652, transposase subunit B	no	0.18

Or look for negative cofitness