Top cofit genes for PP_1186 from Pseudomonas putida KT2440

two component system DNA-binding transcriptional dual regulator
SEED: Transcriptional regulatory protein PhoP
KEGG: two-component system, OmpR family, response regulator PhoP

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_1187		sensor protein	0.99	0.36
2	PP_1076		aquaglyceroporin	0.78	0.33
3	PP_2299		Trigger factor	0.87	0.30
4	PP_2096		fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase	0.51	0.29
5	PP_0856		conserved lipoprotein of unknown function	0.79	0.29
6	PP_2148		transcription-repair coupling factor	0.74	0.28
7	PP_1627		conserved protein of unknown function	0.53	0.28
8	PP_5279		conserved protein of unknown function	no	0.28
9	PP_1663		conserved exported protein of unknown function	0.60	0.27
10	PP_1204		putative Lipoprotein	0.80	0.27
11	PP_1075		glycerol kinase	0.88	0.26
12	PP_5309		oxidative and nitrosative stress transcriptional dual regulator	0.61	0.26
13	PP_5084		penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase	0.81	0.26
14	PP_5283		periplasmic dipeptide transport protein	0.30	0.26
15	PP_1797		HlyD family secretion protein	0.44	0.26
16	PP_2030		conserved protein of unknown function	0.27	0.25
17	PP_1036		membrane-bound lytic murein transglycosylase F	0.48	0.25
18	PP_0180		putative cytochrome c family protein	no	0.25
19	PP_0551		MORN domain protein	0.80	0.25
20	PP_4936		O-antigen polymerase	0.24	0.24

Or look for negative cofitness