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  • Top cofit genes for PP_1099 from Pseudomonas putida KT2440

    Cold shock protein CapB
    SEED: Cold shock protein CspA
    KEGG: cold shock protein (beta-ribbon, CspA family)

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4722 Transcription elongation factor GreA no 0.37
    2 PP_1226 pre-queuosine 0 synthase 0.37 0.34
    3 PP_5294 Ribonuclease PH 0.41 0.33
    4 PP_1786 putative Glycosyl transferase no 0.31
    5 PP_0123 DNA polymerase I, 5 0.51 0.31
    6 PP_3957 choline/carnitine/betaine transporter BetTC no 0.31
    7 PP_4859 Transcriptional regulator, TetR family 0.43 0.30
    8 PP_4532 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis 0.22 0.30
    9 PP_3649 Transcriptional regulator, GntR family no 0.30
    10 PP_4939 conserved protein of unknown function no 0.29
    11 PP_5064 choline dehydrogenase 0.54 0.29
    12 PP_1320 stringent starvation protein A no 0.29
    13 PP_4988 signal transduction histidine kinase CheA/CheY-like receiver no 0.29
    14 PP_4546 ATP-dependent helicase HrpA 0.20 0.28
    15 PP_2929 Carboxynorspermidine/carboxyspermidine decarboxylase no 0.28
    16 PP_1906 ribosomal large subunit pseudouridine synthase C 0.46 0.28
    17 PP_5354 conserved protein of unknown function 0.36 0.28
    18 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase no 0.27
    19 PP_4880 exoribonuclease R 0.28 0.27
    20 PP_2928 Saccharopine dehydrogenase no 0.27

    Or look for negative cofitness