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  • Top cofit genes for PP_1092 from Pseudomonas putida KT2440

    DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites
    SEED: Endonuclease III (EC 4.2.99.18)
    KEGG: endonuclease III

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0927 aromatic amino acid transport protein 0.20 0.19
    2 PP_4063 putative Long-chain-fatty-acid-CoA ligase no 0.18
    3 PP_1505 Phosphoenolpyruvate carboxylase 0.59 0.17
    4 PP_0481 Catalase 0.63 0.16
    5 PP_0123 DNA polymerase I, 5 0.78 0.16
    6 PP_5565 conserved protein of unknown function no 0.15
    7 PP_1629 Protein RecA 0.56 0.15
    8 PP_1984 Transcriptional regulator, LysR family no 0.15
    9 PP_2337 aconitate isomerase no 0.15
    10 PP_2439 peroxiredoxin, alkylhydroperoxide reductase - small subunit 0.48 0.15
    11 PP_3248 Dyp-type peroxidase family protein 0.46 0.15
    12 PP_1826 Hydrolase, isochorismatase family no 0.14
    13 PP_4930 putative small multidrug resistance protein 0.20 0.14
    14 PP_1832 putative Oxidase no 0.14
    15 PP_5221 conserved protein of unknown function, UPF0178 family no 0.14
    16 PP_0792 catabolite repressor-activator, DNA-binding transcriptional dual regulator no 0.14
    17 PP_1387 Probable HTH-type transcriptional regulator TtgR 0.38 0.14
    18 PP_4700 pantothenate synthetase 0.51 0.14
    19 PP_0365 Malonyl-[acyl-carrier protein] O-methyltransferase 0.25 0.14
    20 PP_1289 conserved protein of unknown function, DUF328 family 0.62 0.13

    Or look for negative cofitness