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  • Top cofit genes for PP_1048 from Pseudomonas putida KT2440

    putative protein secretion protein for export
    SEED: General secretion pathway protein F / Type II secretory pathway, component PulF
    KEGG: general secretion pathway protein F

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_2585 Alpha-ketoglutaric semialdehyde dehydrogenase 0.18 0.17
    2 PP_1114 SEC-C domain protein no 0.16
    3 PP_0790 Inner membrane protein AmpE no 0.16
    4 PP_2025 Exonuclease SbcD no 0.16
    5 PP_0079 putative transcriptional regulator no 0.16
    6 PP_5473 putative transcriptional regulator, LuxR family no 0.16
    7 PP_4424 Uncharacterized HTH-type transcriptional regulator y4tD no 0.16
    8 PP_5381 hypothetical protein no 0.16
    9 PP_5322 putative metal ion transporter no 0.16
    10 PP_5533 conserved protein of unknown function no 0.16
    11 PP_0224 Monooxygenase, DszC family no 0.15
    12 PP_3532 Transcriptional regulator, AsnC family no 0.15
    13 PP_2084 Putative regulator of ribonuclease activity 0.61 0.15
    14 PP_2536 Glutathione S-transferase family protein 0.19 0.14
    15 PP_3233 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family no 0.14
    16 PP_3005 conserved protein of unknown function no 0.14
    17 PP_3927 Methyltransferase type 12 no 0.14
    18 PP_2264 putative Sugar ABC transporter, periplasmic sugar-binding protein no 0.14
    19 PP_2416 putative Iron ABC transporter, ATP-binding protein no 0.14
    20 PP_4553 RNA polymerase sigma-70 factor, ECF subfamily no 0.14

    Or look for negative cofitness