Top cofit genes for PP_1028 from Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: LysR family transcriptional regulator YnfL

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4682		conserved protein of unknown function containing tetratricopeptide repeat domain	no	0.23
2	PP_4375		flagellar chaperone, inhibits premature FliC assembly	no	0.21
3	PP_1734		Probable septum site-determining protein MinC	no	0.21
4	PP_4378		flagellin, filament structural protein	no	0.21
5	PP_2971		transposase	no	0.21
6	PP_3393		CAIB/BAIF family protein	0.27	0.21
7	PP_2618		conserved exported protein of unknown function	no	0.20
8	PP_4376		flagellar filament capping protein	no	0.20
9	PP_4380		Flagellar hook-associated protein FlgL	no	0.20
10	PP_1623		RNA polymerase, sigma S (sigma 38) factor	0.30	0.20
11	PP_2280		conserved protein of unknown function	no	0.20
12	PP_2074		Transcriptional regulator, LysR family	no	0.19
13	PP_3719		Putrescine-binding periplasmic protein	no	0.19
14	PP_4372		Sensory box histidine kinase FleS	no	0.19
15	PP_5486		conserved protein of unknown function	no	0.19
16	PP_4382		Peptidoglycan hydrolase FlgJ	no	0.19
17	PP_4396		conserved protein of unknown function	no	0.18
18	PP_3614		conserved membrane protein of unknown function	no	0.18
19	PP_4642		Cyclic diguanosine monophosphate-binding protein	no	0.18
20	PP_4369		Flagellar M-ring protein	no	0.18

Or look for negative cofitness