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  • Top cofit genes for PP_1016 from Pseudomonas putida KT2440

    mannose/glucose ABC transporter, permease protein
    SEED: Glucose ABC transport system, inner membrane component 1
    KEGG: multiple sugar transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1015 mannose/glucose ABC transporter, glucose-binding periplasmic protein 0.99 0.86
    2 PP_1018 mannose/glucose ABC transporter - ATP binding subunit 0.99 0.86
    3 PP_1017 mannose/glucose ABC transporter, permease protein 0.99 0.85
    4 PP_1011 glucokinase 0.99 0.84
    5 PP_1012 DNA-binding response regulator 0.98 0.82
    6 PP_1013 Sensor histidine kinase 0.99 0.77
    7 PP_1014 aldose-ketose isomerase 0.36 0.54
    8 PP_3417 D-gluconate transporter 0.93 0.51
    9 PP_5348 Transcriptional regulator, LysR family 0.68 0.41
    10 PP_5347 pyruvate carboxylase subunit A 0.71 0.40
    11 PP_5346 pyruvate carboxylase subunit B 0.70 0.39
    12 PP_1022 glucose 6-phosphate-1-dehydrogenase 0.99 0.38
    13 PP_1009 glyceraldehyde-3-phosphate dehydrogenase 0.74 0.37
    14 PP_0362 Biotin synthase 0.60 0.36
    15 PP_2168 Transaldolase 0.76 0.35
    16 PP_0363 8-amino-7-oxononanoate synthase 0.39 0.34
    17 PP_1444 quinoprotein glucose dehydrogenase 0.56 0.34
    18 PP_4984 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.39 0.34
    19 PP_0364 pimeloyl-[acp] methyl ester esterase no 0.33
    20 PP_1348 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase no 0.33

    Or look for negative cofitness