Top cofit genes for PP_1012 from Pseudomonas putida KT2440

DNA-binding response regulator
SEED: DNA-binding response regulator GltR, controls specific porins for the entry of glucose

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_1016		mannose/glucose ABC transporter, permease protein	0.98	0.82
2	PP_1015		mannose/glucose ABC transporter, glucose-binding periplasmic protein	0.97	0.81
3	PP_1017		mannose/glucose ABC transporter, permease protein	0.97	0.79
4	PP_1018		mannose/glucose ABC transporter - ATP binding subunit	0.98	0.79
5	PP_1011		glucokinase	0.97	0.77
6	PP_1013		Sensor histidine kinase	0.98	0.69
7	PP_1014		aldose-ketose isomerase	0.47	0.49
8	PP_3417		D-gluconate transporter	0.79	0.42
9	PP_1009		glyceraldehyde-3-phosphate dehydrogenase	0.51	0.34
10	PP_5348		Transcriptional regulator, LysR family	0.84	0.32
11	PP_5347		pyruvate carboxylase subunit A	0.80	0.32
12	PP_0902		integral membrane sensor signal transduction histidine kinase	0.26	0.31
13	PP_5346		pyruvate carboxylase subunit B	0.82	0.31
14	PP_2168		Transaldolase	0.70	0.31
15	PP_0901		DNA-binding response regulator	0.23	0.30
16	PP_1348		putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase	no	0.30
17	PP_0312		electron transfer flavoprotein, alpha subunit	0.18	0.30
18	PP_0311		putative dimethylglycine dehydrogenase subunit	0.19	0.29
19	PP_1444		quinoprotein glucose dehydrogenase	0.37	0.29
20	PP_0362		Biotin synthase	0.69	0.29

Or look for negative cofitness