Top cofit genes for PP_0997 from Pseudomonas putida KT2440

Sigma-54 dependent transcriptional regulator/sensory box protein
SEED: Sigma-54 dependent transcriptional regulator/sensory box protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_0988		glycine dehydrogenase	0.84	0.89
2	PP_0986		aminomethyltransferase	0.65	0.71
3	PP_0989		glycine cleavage system H protein 1	0.72	0.65
4	PP_0987		L-serine dehydratase	0.59	0.45
5	PP_5203		5-formyltetrahydrofolate cyclo-ligase	0.30	0.41
6	PP_2703		major facilitator transporter	0.33	0.37
7	PP_4948		Acyl-CoA dehydrogenase family protein	no	0.35
8	PP_2704		Peptidase, M20/M25/M40 family	0.22	0.34
9	PP_1127		Carboxylesterase	0.41	0.33
10	PP_2436		Transcriptional regulator, LysR family	no	0.31
11	PP_4840		D-alanine, beta-alanine, D-serine, glycine permease	no	0.28
12	PP_3925		conserved protein of unknown function	no	0.28
13	PP_1941		conserved protein of unknown function	no	0.27
14	PP_1378		alpha-ketoglutarate permease	no	0.27
15	PP_1377		beta-ketoadipyl-CoA thiolase	no	0.27
16	PP_1231		quinolinate synthase [4Fe-4S] cluster subunit	0.31	0.26
17	PP_0787		quinolinate phosphoribosyltransferase (decarboxylating) monomer	0.32	0.26
18	PP_2001		O-succinylhomoserine sulfhydrylase	0.42	0.26
19	PP_5097		homoserine O-acetyltransferase	0.41	0.25
20	PP_4901		conserved inner membrane protein	0.51	0.25

Or look for negative cofitness