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  • Top cofit genes for PP_0995 from Pseudomonas putida KT2440

    conserved membrane protein of unknown function
    SEED: EXTRACYTOPLASMIC FUNCTION ALTERNATIVE SIGMA FACTOR

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4505 Sensor histidine kinase 0.26 0.53
    2 PP_5502 ribosome modulation factor no 0.49
    3 PP_0951 Ribosome hibernation promoting factor no 0.48
    4 PP_0413 Polyamine ABC transporter, permease protein no 0.45
    5 PP_4143 conserved protein of unknown function no 0.44
    6 PP_4008 ATP-dependent serine protease 0.73 0.42
    7 PP_4058 1,4-alpha-glucan branching enzyme no 0.41
    8 PP_4342 flagellar synthesis regulator, putative ATPase no 0.41
    9 PP_0185 Positive alginate biosynthesis regulatory protein no 0.39
    10 PP_1860 Organic hydroperoxide resistance transcriptional regulator 0.67 0.38
    11 PP_1198 transcriptional regulator, Cro/CI family (higA antitoxin like) no 0.38
    12 PP_2320 conserved exported protein of unknown function no 0.37
    13 PP_4591 Ribonuclease D no 0.37
    14 PP_4343 Flagellar biosynthesis protein FlhF no 0.37
    15 PP_2322 Major outer membrane lipoprotein no 0.36
    16 PP_1201 conserved exported protein of unknown function no 0.36
    17 PP_5084 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase no 0.36
    18 PP_4286 allantoinase 0.57 0.35
    19 PP_1202 putative enzyme involved in modification of phospholipids no 0.35
    20 PP_3649 Transcriptional regulator, GntR family no 0.34

    Or look for negative cofitness