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  • Top cofit genes for PP_0940 from Pseudomonas putida KT2440

    putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD
    SEED: TldD protein, part of TldE/TldD proteolytic complex
    KEGG: TldD protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0942 regulatory protease 0.96 0.57
    2 PP_2862 Undecaprenyl-diphosphatase 0.90 0.25
    3 PP_0680 ATP-dependent protease-like protein 0.38 0.20
    4 PP_4143 conserved protein of unknown function 0.73 0.19
    5 PP_0058 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase 0.43 0.19
    6 PP_0941 putative ribosome associated protein 0.79 0.19
    7 PP_5217 Polyphosphate kinase 0.63 0.19
    8 PP_4050 glycogen synthase 0.47 0.17
    9 PP_0766 adhesin-associated sorting protein (DUF1329) (from data) 0.32 0.17
    10 PP_t49 tRNA-Met no 0.17
    11 PP_3578 phosphoglucomutase 0.95 0.16
    12 PP_1707 D-isomer specific 2-hydroxyacid dehydrogenase family protein 0.25 0.16
    13 PP_4815 putative Membrane protein 0.54 0.16
    14 PP_0765 putative adhesin (DUF1302) (from data) 0.33 0.16
    15 PP_1099 Cold shock protein CapB no 0.16
    16 PP_3695 conserved protein of unknown function no 0.16
    17 PP_0371 Transcriptional regulator, LysR family 0.32 0.16
    18 PP_0980 Probable cytosol aminopeptidase 0.86 0.15
    19 PP_3518 conserved exported protein of unknown function no 0.15
    20 PP_2987 conserved protein of unknown function 0.76 0.15

    Or look for negative cofitness