Top cofit genes for PP_0901 from Pseudomonas putida KT2440

DNA-binding response regulator
SEED: DNA-binding response regulator ColR

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_0902		integral membrane sensor signal transduction histidine kinase	0.93	0.92
2	PP_0938		conserved protein of unknown function	0.77	0.38
3	PP_0413		Polyamine ABC transporter, permease protein	0.62	0.37
4	PP_1460		putative Membrane protein	0.38	0.37
5	PP_2711		Oxidoreductase, short-chain dehydrogenase/reductase family	0.94	0.33
6	PP_1430		putative periplasmic serine endoprotease DegP-like	0.56	0.32
7	PP_1202		putative enzyme involved in modification of phospholipids	0.45	0.31
8	PP_1201		conserved exported protein of unknown function	0.53	0.31
9	PP_1019		carbohydrate-selective porin	0.51	0.31
10	PP_1012		DNA-binding response regulator	0.23	0.30
11	PP_0311		putative dimethylglycine dehydrogenase subunit	0.75	0.30
12	PP_3300		Transcriptional regulator, tetR family	no	0.30
13	PP_2906		Sensor histidine kinase	0.57	0.29
14	PP_1018		mannose/glucose ABC transporter - ATP binding subunit	no	0.29
15	PP_0312		electron transfer flavoprotein, alpha subunit	0.65	0.29
16	PP_0310		putative dimethylglycine dehydrogenase subunit	0.73	0.29
17	PP_0414		Polyamine ABC transporter, permease protein	no	0.28
18	PP_1015		mannose/glucose ABC transporter, glucose-binding periplasmic protein	0.19	0.28
19	PP_4651		Ubiquinol oxidase subunit I, cyanide insensitive	0.27	0.27
20	PP_1017		mannose/glucose ABC transporter, permease protein	no	0.27

Or look for negative cofitness