Top cofit genes for PP_0888 from Pseudomonas putida KT2440

Photosynthetic apparatus regulatory protein RegA
SEED: Dna binding response regulator PrrA (RegA)
KEGG: two-component system, response regulator RegA

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4546		ATP-dependent helicase HrpA	0.56	0.38
2	PP_1994		tRNA pseudouridine (38-40)synthase	0.50	0.36
3	PP_5309		oxidative and nitrosative stress transcriptional dual regulator	0.61	0.34
4	PP_5028		proline iminopeptidase	0.60	0.33
5	PP_4880		exoribonuclease R	0.70	0.33
6	PP_5310		junction-specific ATP-dependent DNA helicase	0.71	0.33
7	PP_2336		aconitate hydratase 1	0.71	0.32
8	PP_0393		putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	0.85	0.32
9	PP_1629		Protein RecA	0.62	0.31
10	PP_4129		NADH:ubiquinone oxidoreductase, membrane subunit L	no	0.31
11	PP_4993		Glutathione synthetase	0.78	0.30
12	PP_0214		4-aminobutyrate aminotransferase	0.61	0.30
13	PP_4131		NADH-quinone oxidoreductase subunit N	no	0.30
14	PP_0065		NAD-binding component of TrK potassium transporter	0.63	0.29
15	PP_4124		NADH-quinone oxidoreductase subunit G	0.33	0.29
16	PP_0123		DNA polymerase I, 5	0.70	0.29
17	PP_5352		DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex	0.29	0.29
18	PP_1353		conserved membrane protein of unknown function	no	0.29
19	PP_5063		betaine aldehyde dehydrogenase, NAD-dependent	0.68	0.28
20	PP_1126		putative Hydrolase	no	0.28

Or look for negative cofitness