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  • Top cofit genes for PP_0870 from Pseudomonas putida KT2440

    putative Glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein
    SEED: L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation
    KEGG: osmoprotectant transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0218 Sensory box protein 0.71 0.21
    2 PP_4780 putative Acyl-CoA dehydrogenase no 0.21
    3 PP_4331 conserved protein of unknown function no 0.20
    4 PP_4375 flagellar chaperone, inhibits premature FliC assembly 0.27 0.19
    5 PP_2412 ParA family protein no 0.19
    6 PP_2716 arsenate reductase 0.21 0.19
    7 PP_4389 Flagellar basal-body rod modification protein FlgD 0.20 0.19
    8 PP_4388 Flagellar hook protein FlgE 0.33 0.18
    9 PP_4386 flagellar basal-body rod protein FlgF 0.34 0.18
    10 PP_4341 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons 0.35 0.18
    11 PP_2859 conserved protein of unknown function 0.27 0.18
    12 PP_4384 Flagellar L-ring protein 0.48 0.18
    13 PP_3863 putative Phage tail protein no 0.18
    14 PP_3415 Transcriptional regulator, LacI family no 0.18
    15 PP_4382 Peptidoglycan hydrolase FlgJ 0.31 0.17
    16 PP_4369 Flagellar M-ring protein 0.35 0.17
    17 PP_4366 flagellum-specific ATP synthase 0.38 0.17
    18 PP_4385 flagellar basal-body rod protein FlgG 0.35 0.17
    19 PP_4380 Flagellar hook-associated protein FlgL 0.27 0.17
    20 PP_0164 conserved protein of unknown function 0.69 0.17

    Or look for negative cofitness