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  • Top cofit genes for PP_0789 from Pseudomonas putida KT2440

    N-acetyl-anhydromuramyl-L-alanine-amidase
    SEED: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD
    KEGG: AmpD protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0405 conserved protein of unknown function 0.94 0.88
    2 PP_1355 Muropeptide permease AmpG 0.96 0.86
    3 PP_0434 Anhydro-N-acetylmuramic acid kinase 0.91 0.82
    4 PP_3627 conserved protein of unknown function no 0.81
    5 PP_1627 conserved protein of unknown function 0.78 0.77
    6 PP_1798 Outer membrane efflux protein no 0.76
    7 PP_2145 beta-N-acetylglucosaminidase 0.93 0.76
    8 PP_1777 phosphomannomutase 0.66 0.75
    9 PP_2148 transcription-repair coupling factor 0.65 0.74
    10 PP_0540 conserved inner membrane protein 0.86 0.73
    11 PP_1803 UDP-sugar epimerase 0.90 0.72
    12 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.91 0.72
    13 PP_5283 periplasmic dipeptide transport protein no 0.72
    14 PP_1774 conserved exported protein of unknown function no 0.70
    15 PP_1807 2-dehydro-3-deoxyphosphooctonate aldolase no 0.68
    16 PP_1776 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase 0.87 0.67
    17 PP_1800 Oxidoreductase Rmd 0.48 0.67
    18 PP_1801 Glycosyl transferase WbpY 0.88 0.66
    19 PP_1805 Polysaccharide biosynthesis protein 0.79 0.66
    20 PP_1871 Protease HtpX 0.39 0.65

    Or look for negative cofitness