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  • Top cofit genes for PP_0698 from Pseudomonas putida KT2440

    Transcriptional regulator, LysR family
    SEED: D-serine dehydratase transcriptional activator

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0507 putative ABC efflux transporter, ATP-binding protein 0.31 0.18
    2 PP_1692 conserved protein of unknown function no 0.16
    3 PP_2348 Sensor histidine kinase no 0.16
    4 PP_1866 Phospho-2-dehydro-3-deoxyheptonate aldolase no 0.16
    5 PP_2152 glycerophosphoryl diester phosphodiesterase no 0.15
    6 PP_3612 putative TonB-dependent receptor no 0.15
    7 PP_1971 conserved protein of unknown function 0.18 0.14
    8 PP_1417 putative Tricarboxylate transport protein TctB no 0.14
    9 PP_1063 DNA-binding transcriptional regulator, homocysteine-binding no 0.14
    10 PP_1103 ATP-dependent helicase, DEAD box family no 0.14
    11 PP_5340 Acetylpolyamine aminohydrolase 0.36 0.14
    12 PP_3790 diaminopimelate epimerase no 0.14
    13 PP_0276 Transcriptional regulator, Cro/CI family no 0.14
    14 PP_3443 putative glyceraldehyde-3-phosphate dehydrogenase no 0.14
    15 PP_4776 AsnC family transcriptional regulator 0.18 0.14
    16 PP_2969 putative repressor of copper utilisation proteins no 0.14
    17 PP_1659 conserved exported protein of unknown function no 0.14
    18 PP_4835 conserved exported protein of unknown function no 0.13
    19 PP_3591 Delta 1-piperideine-2-carboxylate reductase no 0.13
    20 PP_2103 conserved protein of unknown function no 0.13

    Or look for negative cofitness