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  • Top cofit genes for PP_0595 from Pseudomonas putida KT2440

    Transcriptional regulator, LysR family
    SEED: LysR family transcriptional regulator PA0133

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0596 Omega-amino acid--pyruvate aminotransferase 0.97 0.88
    2 PP_0597 methylmalonate-semialdehyde dehydrogenase 0.96 0.82
    3 PP_5271 DNA-binding transcriptional dual regulator, leucine-binding 0.91 0.52
    4 PP_5270 D-amino-acid:quinone oxidoreductase (deaminating) 0.43 0.46
    5 PP_0412 Polyamine ABC transporter, periplasmic polyamine-binding protein 0.31 0.37
    6 PP_0411 Polyamine ABC transporter, ATP-binding protein 0.62 0.36
    7 PP_0213 succinate-semialdehyde dehydrogenase (NADP+) 0.65 0.33
    8 PP_0414 Polyamine ABC transporter, permease protein 0.21 0.32
    9 PP_0056 choline dehydrogenase 0.27 0.32
    10 PP_0410 DNA-binding response regulator UhpA 0.87 0.31
    11 PP_0055 transcriptional regulator no 0.31
    12 PP_0413 Polyamine ABC transporter, permease protein 0.21 0.30
    13 PP_5262 Probable multidrug resistance protein NorM no 0.29
    14 PP_1984 Transcriptional regulator, LysR family 0.29 0.29
    15 PP_1842 Glutamine amidotransferase, class I 0.69 0.27
    16 PP_4547 putative Glutamine synthetase no 0.26
    17 PP_0214 4-aminobutyrate aminotransferase 0.55 0.26
    18 PP_5047 two-component system sensory histidine kinase/phosphatase GlnL/GlnG 0.93 0.24
    19 PP_4548 putative Oxidoreductase 0.28 0.23
    20 PP_0266 Agmatine deiminase 0.26 0.23

    Or look for negative cofitness