Top cofit genes for PP_0563 from Pseudomonas putida KT2440

Response regulator
SEED: Probable two-component response regulator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_2413		GGDEF family protein	no	0.33
2	PP_1490		Probable biofilm formation methyltransferase WspC	no	0.31
3	PP_1488		Methyl-accepting chemotaxis transducer	no	0.31
4	PP_4904		Flagellar motor rotation protein	no	0.27
5	PP_0672		Sensory box protein	no	0.25
6	PP_2372		putative Periplasmic sugar-binding protein	no	0.24
7	PP_4905		Flagellar motor rotation protein	no	0.23
8	PP_4959		diguanylate cyclase	no	0.22
9	PP_1494		Response regulator/GGDEF domain protein	no	0.22
10	PP_2257		putative aerotaxis receptor	no	0.22
11	PP_3761		Sensor histidine kinase/response regulator	no	0.21
12	PP_1087		Outer membrane protein, OmpA family	no	0.21
13	PP_1492		Sensor histidine kinase/response regulator	no	0.21
14	PP_0355		Response regulator	no	0.21
15	PP_4375		flagellar chaperone, inhibits premature FliC assembly	no	0.20
16	PP_4373		Transcriptional regulator FleQ	0.69	0.20
17	PP_4363		Sensor histidine kinase/response regulator	no	0.19
18	PP_0173		putative transcriptional factor-related protein	no	0.19
19	PP_5051		conserved protein of unknown function	no	0.19
20	PP_4250		cytochrome c oxidase subunit I, cbb3-type	0.28	0.18

Or look for negative cofitness