Top cofit genes for PP_0563 from Pseudomonas putida KT2440

Response regulator
SEED: Probable two-component response regulator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_2413		GGDEF family protein	no	0.34
2	PP_1488		Methyl-accepting chemotaxis transducer	0.54	0.32
3	PP_1490		Probable biofilm formation methyltransferase WspC	0.58	0.32
4	PP_4904		Flagellar motor rotation protein	0.26	0.30
5	PP_0672		Sensory box protein	0.48	0.29
6	PP_4905		Flagellar motor rotation protein	0.27	0.26
7	PP_2372		putative Periplasmic sugar-binding protein	no	0.26
8	PP_4959		diguanylate cyclase	no	0.24
9	PP_4373		Transcriptional regulator FleQ	0.69	0.24
10	PP_1494		Response regulator/GGDEF domain protein	0.56	0.24
11	PP_3761		Sensor histidine kinase/response regulator	no	0.23
12	PP_0355		Response regulator	no	0.23
13	PP_4375		flagellar chaperone, inhibits premature FliC assembly	no	0.23
14	PP_2257		putative aerotaxis receptor	no	0.23
15	PP_1087		Outer membrane protein, OmpA family	no	0.22
16	PP_4391		flagellar basal-body rod protein FlgB	0.51	0.21
17	PP_1492		Sensor histidine kinase/response regulator	0.47	0.21
18	PP_4390		flagellar basal-body rod protein FlgC	0.47	0.21
19	PP_4363		Sensor histidine kinase/response regulator	no	0.21
20	PP_4361		Flagellar hook-length control protein FliK	0.48	0.20

Or look for negative cofitness