Top cofit genes for PP_0410 from Pseudomonas putida KT2440

DNA-binding response regulator UhpA
SEED: DNA-binding response regulator, LuxR family, near polyamine transporter

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_0412		Polyamine ABC transporter, periplasmic polyamine-binding protein	0.79	0.51
2	PP_0411		Polyamine ABC transporter, ATP-binding protein	0.70	0.48
3	PP_0414		Polyamine ABC transporter, permease protein	0.69	0.33
4	PP_0413		Polyamine ABC transporter, permease protein	0.73	0.33
5	PP_0597		methylmalonate-semialdehyde dehydrogenase	0.88	0.33
6	PP_5271		DNA-binding transcriptional dual regulator, leucine-binding	0.80	0.33
7	PP_0595		Transcriptional regulator, LysR family	0.87	0.31
8	PP_5270		D-amino-acid:quinone oxidoreductase (deaminating)	no	0.25
9	PP_0596		Omega-amino acid--pyruvate aminotransferase	0.90	0.24
10	PP_4865		High-affinity branched-chain amino acid transport system permease protein BraE	no	0.20
11	PP_4863		high-affinity branched-chain amino acid transporter, ATP-binding	no	0.18
12	PP_0409		Sensory box histidine kinase	0.81	0.16
13	PP_4866		High-affinity branched-chain amino acid transport system permease protein BraD	0.31	0.16
14	PP_0298		AraC-family transcriptional regulator	no	0.16
15	PP_4654		tRNA/tmRNA (uracil-C(5))-methyltransferase	0.59	0.15
16	PP_4864		High-affinity branched-chain amino acid transport ATP-binding protein BraF	no	0.15
17	PP_5217		Polyphosphate kinase	0.40	0.15
18	PP_4480		arginine N-succinyltransferase, subunit alpha	0.30	0.14
19	PP_2388		Transporter, LysE family	no	0.14
20	PP_2260		putative glycerol-phosphate ABC transporter, ATP-binding protein	0.40	0.14

Or look for negative cofitness