Top cofit genes for PP_0409 from Pseudomonas putida KT2440

Sensory box histidine kinase
SEED: Probable two-component sensor, near polyamine transporter

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_2889		putative Transmembrane regulator PrtR	0.73	0.35
2	PP_2389		conserved protein of unknown function	no	0.35
3	PP_4629		Sensory box protein	no	0.34
4	PP_0412		Polyamine ABC transporter, periplasmic polyamine-binding protein	0.86	0.28
5	PP_5053		Protein-export protein SecB	0.33	0.27
6	PP_1758		putative sulfurtransferase containing rhodanese-like domain	no	0.26
7	PP_2928		Saccharopine dehydrogenase	0.60	0.25
8	PP_5041		glycogen phosphorylase	0.26	0.25
9	PP_3835		Sensory box histidine kinase	no	0.25
10	PP_4184		branched chain amino acid transporter	no	0.25
11	PP_1364		conserved exported protein of unknown function	no	0.25
12	PP_0261		adenosine-3'(2'),5'-bisphosphate nucleotidase	0.55	0.24
13	PP_1663		conserved exported protein of unknown function	0.17	0.23
14	PP_0574		DNA-binding response regulator, LuxR family	no	0.23
15	PP_0118		zinc import ATP-binding protein	no	0.22
16	PP_0806		putative Surface adhesion protein	no	0.22
17	PP_3761		Sensor histidine kinase/response regulator	no	0.22
18	PP_4008		ATP-dependent serine protease	0.52	0.22
19	PP_0803		Protein secretion ABC efflux system, membrane fusion protein	no	0.21
20	PP_0804		Protein secretion ABC efflux system, permease and ATP-binding protein	no	0.21

Or look for negative cofitness