Top cofit genes for PP_0401 from Pseudomonas putida KT2440

Ribosomal RNA small subunit methyltransferase A
SEED: SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)
KEGG: 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4880		exoribonuclease R	0.70	0.34
2	PP_5084		penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase	0.56	0.32
3	PP_5053		Protein-export protein SecB	0.64	0.32
4	PP_4204		antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor	0.25	0.32
5	PP_4006		Putative arginyl-tRNA--protein transferase	0.51	0.31
6	PP_5706		Sec translocation complex - SecG subunit	0.60	0.30
7	PP_0166		HlyD family secretion protein	0.23	0.29
8	PP_0167		Toxin secretion ATP-binding protein	no	0.29
9	PP_5309		oxidative and nitrosative stress transcriptional dual regulator	0.78	0.29
10	PP_1428		Sigma factor AlgU negative regulatory protein	0.35	0.29
11	PP_0168		putative surface adhesion protein	no	0.28
12	PP_4519		Agglutination protein	0.24	0.28
13	PP_4766		ATP-dependent RNA helicase	no	0.28
14	PP_0872		Peptide chain release factor 3	0.79	0.27
15	PP_4342		flagellar synthesis regulator, putative ATPase	0.53	0.27
16	PP_5114		putative adenine methyltransferase	0.69	0.27
17	PP_4874		50S ribosomal protein L9	0.82	0.27
18	PP_5045		tRNA sulfurtransferase	0.71	0.26
19	PP_4875		conserved membrane protein of unknown function	0.33	0.26
20	PP_2331		conserved membrane protein of unknown function	no	0.26

Or look for negative cofitness