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  • Top cofit genes for PP_0352 from Pseudomonas putida KT2440

    RNA polymerase sigma-70 factor, ECF subfamily
    SEED: RNA polymerase sigma-70 factor, ECF subfamily
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4781 Sensor histidine kinase 0.48 0.24
    2 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 0.22
    3 PP_2841 Site-specific recombinase, phage integrase family no 0.20
    4 PP_1821 Glutathione S-transferase family protein 0.35 0.19
    5 PP_t49 tRNA-Met no 0.19
    6 PP_1413 Uracil-DNA glycosylase 0.57 0.18
    7 PP_1295 ATP-dependent RNA helicase RhlB no 0.18
    8 PP_1657 modified nucleoside triphosphate pyrophosphohydrolase no 0.18
    9 PP_2933 GSH-dependent disulfide bond oxidoreductase 0.34 0.18
    10 PP_0066 Ribosomal RNA small subunit methyltransferase B no 0.18
    11 PP_5299 glutamate-putrescine ligase no 0.18
    12 PP_2040 Major facilitator family transporter no 0.17
    13 PP_1894 glutathione S-transferase reducing arsenate to arsenite no 0.17
    14 PP_1627 conserved protein of unknown function no 0.17
    15 PP_5194 aminomethyltransferase no 0.17
    16 PP_5272 conserved protein of unknown function 0.51 0.17
    17 PP_0564 conserved protein of unknown function no 0.17
    18 PP_2367 putative inner membrane transport protein no 0.17
    19 PP_1061 putative ATP-dependent DNA helicase lhr 0.31 0.17
    20 PP_1204 putative Lipoprotein no 0.17

    Or look for negative cofitness