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Cofit
Protein
Homologs
Top cofit genes for PP_0301 from
Pseudomonas putida KT2440
betainyl-CoA thiolase
KEGG: acyl-CoA thioester hydrolase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PP
_0302
L-carnitine 3-dehydrogenase (EC 1.1.1.108)
(from data)
0.91
0.40
2
PP
_0315
putative glycine-betaine dioxygenase subunit
0.87
0.35
3
PP
_0298
AraC-family transcriptional regulator
0.88
0.32
4
PP
_0295
choline / betaine / carnitine ABC transporter - membrane subunit
0.86
0.31
5
PP
_0316
putative glycine-betaine dioxygenase subunit
0.89
0.29
6
PP
_0309
conserved protein of unknown function
0.85
0.28
7
PP
_0294
Choline / carnitine / glycine betaine ABC transporter, ATPase component
(from data)
0.83
0.27
8
PP
_0304
Carnitine uptake ABC transporter, periplasmic component
0.87
0.27
9
PP
_0323
sarcosine oxidase subunit beta
0.89
0.25
10
PP
_0324
sarcosine oxidase subunit delta
0.80
0.24
11
PP
_0296
choline / betaine / carnitine ABC transporter - substrate binding protein
0.86
0.24
12
PP
_0325
sarcosine oxidase subunit alpha
0.92
0.22
13
PP
_0303
dehydrocarnitine cleavage enzyme
0.89
0.22
14
PP
_0322
serine hydroxymethyltransferase
0.88
0.22
15
PP
_0308
putative dipeptidase
0.84
0.21
16
PP
_0894
conserved protein of unknown function
no
0.20
17
PP
_0326
sarcosine oxidase subunit gamma
0.82
0.18
18
PP
_5441
protein of unknown function
no
0.18
19
PP
_3637
putative Sulfonate ABC transporter, ATP-binding protein
no
0.17
20
PP
_0026
putative cobalt/cadmium/zinc exporter
no
0.17
Or look for
negative cofitness