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  • Top cofit genes for PP_0301 from Pseudomonas putida KT2440

    betainyl-CoA thiolase
    KEGG: acyl-CoA thioester hydrolase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0302 L-carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) 0.91 0.40
    2 PP_0315 putative glycine-betaine dioxygenase subunit 0.87 0.35
    3 PP_0298 AraC-family transcriptional regulator 0.88 0.32
    4 PP_0295 choline / betaine / carnitine ABC transporter - membrane subunit 0.86 0.31
    5 PP_0316 putative glycine-betaine dioxygenase subunit 0.89 0.29
    6 PP_0309 conserved protein of unknown function 0.85 0.28
    7 PP_0294 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) 0.83 0.27
    8 PP_0304 Carnitine uptake ABC transporter, periplasmic component 0.87 0.27
    9 PP_0323 sarcosine oxidase subunit beta 0.89 0.25
    10 PP_0324 sarcosine oxidase subunit delta 0.80 0.24
    11 PP_0296 choline / betaine / carnitine ABC transporter - substrate binding protein 0.86 0.24
    12 PP_0325 sarcosine oxidase subunit alpha 0.92 0.22
    13 PP_0303 dehydrocarnitine cleavage enzyme 0.89 0.22
    14 PP_0322 serine hydroxymethyltransferase 0.88 0.22
    15 PP_0308 putative dipeptidase 0.84 0.21
    16 PP_0894 conserved protein of unknown function no 0.20
    17 PP_0326 sarcosine oxidase subunit gamma 0.82 0.18
    18 PP_5441 protein of unknown function no 0.18
    19 PP_3637 putative Sulfonate ABC transporter, ATP-binding protein no 0.17
    20 PP_0026 putative cobalt/cadmium/zinc exporter no 0.17

    Or look for negative cofitness