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Cofit
Protein
Homologs
Top cofit genes for PP_0288 from
Pseudomonas putida KT2440
putative Oxalate/formate antiporter
SEED: MFS permease
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PP
_t49
tRNA-Met
no
0.23
2
PP
_0053
putative sulfide:quinone oxidoreductase
no
0.23
3
PP
_2413
GGDEF family protein
0.30
0.22
4
PP
_1411
GGDEF domain protein
no
0.22
5
PP
_4246
Periplasmic binding protein
no
0.19
6
PP
_4217
outer membrane ferripyoverdine receptor FpvA, TonB-dependent
no
0.19
7
PP
_1655
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
0.24
0.19
8
PP
_4781
Sensor histidine kinase
no
0.18
9
PP
_0066
Ribosomal RNA small subunit methyltransferase B
no
0.18
10
PP
_0573
conserved protein of unknown function
no
0.17
11
PP
_3990
substrate or modulator of FtsH-mediated proteolysis
no
0.17
12
PP
_1494
Response regulator/GGDEF domain protein
no
0.17
13
PP
_1492
Sensor histidine kinase/response regulator
no
0.17
14
PP
_0672
Sensory box protein
0.45
0.17
15
PP
_4171
conserved exported protein of unknown function
0.45
0.16
16
PP
_4100
Transcriptional regulator, Cro/CI family
no
0.16
17
PP
_0725
conserved hypothetical TPR repeat protein
0.54
0.16
18
PP
_5136
ABC transporter, permease protein
0.37
0.16
19
PP
_5424
conserved protein of unknown function
no
0.15
20
PP
_4405
Sensory box protein
no
0.15
Or look for
negative cofitness