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Cofit
Protein
Homologs
Top cofit genes for PP_0268 from
Pseudomonas putida KT2440
outer-membrane porin D
SEED: Outer membrane porin, OprD family
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PP
_4700
pantothenate synthetase
no
0.22
2
PP
_1185
Outer membrane protein H1
0.36
0.21
3
PP
_2000
amidophosphoribosyl transferase
no
0.20
4
PP
_1370
Glycosyl transferase, group 1 family protein
no
0.19
5
PP
_2386
conserved protein of unknown function
no
0.19
6
PP
_4693
RNA polymerase-binding transcription factor DksA
no
0.19
7
PP
_2507
Oxidoreductase, short-chain dehydrogenase/reductase family
no
0.19
8
PP
_4451
conserved protein of unknown function
no
0.18
9
PP
_2083
putative Lipase
0.31
0.18
10
PP
_1582
conserved protein of unknown function
no
0.17
11
PP
_2639
4-hydroxy-tetrahydrodipicolinate synthase
no
0.17
12
PP
_3754
Beta-ketothiolase BktB
no
0.17
13
PP
_3554
Acyl-CoA dehydrogenase family protein
no
0.17
14
PP
_1664
phosphoribosylglycinamide formyltransferase 1
no
0.16
15
PP
_0234
outer-membrane porin E
0.38
0.16
16
PP
_2084
Putative regulator of ribonuclease activity
0.29
0.16
17
PP
_2302
DNA-binding, ATP-dependent protease
0.45
0.15
18
PP
_0082
tryptophan synthase alpha chain
0.45
0.15
19
PP
_3553
AMP-binding domain protein
no
0.15
20
PP
_3325
putative Outer membrane ferric siderophore receptor
no
0.15
Or look for
negative cofitness